用perl实现生物突变的随机模拟程序代码

2023-12-05 0 618

程序文件:test.pl复制代码 代码如下:#!/bin/perl# filename:test.pluse strict; use warnings; #随便找一个比较好识别的序列 my $DNA=\”AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA\\n\”; my $i; my $mutant; srand(time|$$); $mutant=mutate($DNA); print \”Mutate \\n\”. $DNA; print \”Here is the original DNA:\\n\”; print \”$DNA\\n\”; print \”Here is the mutant DNA:\\n\\n\”; print \”$mutant\\n\”; print \”Here are 10 more successive mutations:\\n\”; for ($i=0;$i<10;++$i) { $mutant=mutate($mutant); print \”$mutant\\n\”; } #子程序:根据序列的长度定义一个随机位置的子程序 sub randomposition { my($string)=@_; return int(rand(length($string))); } #子程序:从一个数组中随机选取一个元素 sub randelement { my(@array)=@_; return $array[rand @array]; } #子程序:引用上面的子程序,从ATGC四个碱基中随机选取一个 sub randomnucleotide { my (@nucleotides)=qw/A T G C/; return randelement(@nucleotides); } #子程序:生成突变的子程序 sub mutate { my($dna)=@_; my(@nucleotides)=qw(A T G C); my($position)=randomposition($dna); my($newbase)=randomnucleotide(@nucleotides); substr($dna,$position,1,$newbase);#substr($string,$initial_position,$length,replacement substring) return $dna; }


结果如下: F:\\>perl\\test.pl Mutate AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA Here is the original DNA: AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA Here is the mutant DNA: AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA Here are 10 more successive mutations: ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA ACAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA ACAAAAAAAAACAAAAAAAAAAAAATAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA ACAAAAAAAAACAAAAAAAAAAAAATAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA ACAAAAAAAAACAAAAAAAAAAAAATAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA ACAAAAAAAAACAAAAAAAAAAAAATAAAAAAAAAAAAAAATGAAAAAAAAAAAAAA ACTAAAAAAAACAAAAAAAAAAAAATAAAAAAAAAAAAAAATGAAAAAAAAAAAAAA ACTAAAAAAAACAAAAAAAAAAAAATAAGAAAAAAAAAAAATGAAAAAAAAAAAAAA ACTAAAAAAAACAAAAAAAAAAAAATAAGAAAAAAAAAAAATGTAAAAAAAAAAAAA ACTAAAAAAAACAAAAAAAAAAAAATAAGAAAAAAAAAAAATGTAAAAAAAAAAAAA F:\\>

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